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56:23
YouTube
OMGenomics
Genes and geography -- a bioinformatics project
This is a full walkthrough of a bioinformatics project: Run PCA/TSNE on some population genotype data. 00:00 Intro 01:07 Hunting for data 04:55 Inspecting the VCF 06:02 Finding population labels for the samples 10:20 Parsing VCF with pysam 16:02 Going from alleles to numbers for a numpy array 21:47 When to work in colab versus python script 26: ...
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